FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930279

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930279
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492834
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG26550.538720948635849No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG8420.17084860216624664No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6530.13249897531420315No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5840.11849831789202857No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5190.1053092927841829No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)