FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930281

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930281
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497063
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG81821.6460690093609862No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT44060.8864067532687003No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC17930.36071886259890595No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG17170.3454290502411163No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG16230.32651796653542914No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15790.3176659699072351No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG15620.3142458803008874No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12680.25509844828522743No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG12520.25187954042042965No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11860.23860154547813858No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC11260.22653064098514675No Hit
ATCGGCTCCCTGGCTGGTGCAATTGGCGGTA10440.21003373817805793No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10060.2023888319991631No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT10020.20158410503296362No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9890.1989687423928154No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8820.17744229604697995No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8760.17623520559768077No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG8660.17422338818218214No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8650.17402220644063227No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7890.15873239408284262No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA7650.15390403228564586No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7350.14786858003914996No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT7300.14686267133140063No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6790.13660240251235758No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG6740.13559649380460828No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6410.12895749633346276No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6400.1287563145919129No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5300.10662632302142787No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5290.106425141279878No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG5120.10300505167353033No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)