FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930282

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930282
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509940
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA20360.399262658351963No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA18120.35533592187316154No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17610.3453347452641487No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG16780.32905832058673573No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG16140.3165078244499353No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG15570.30533003882809745No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG12170.23865552810134524No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG11630.22806604698591992No Hit
GCGAGAGGTCGCAGATTTGTACGGGTGCAGGGTATCGGTACGAG11060.21688826136408204No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG9880.1937482841118563No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG9840.19296387810330626No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG9550.1872769345413186No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT9270.18178609248146843No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9180.18002117896223085No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8950.17551084441306822No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8730.17119661136604306No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT8640.1694316978468055No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8190.1606071302506177No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA7580.14864493862022984No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG7570.1484488371180923No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT7560.1482527356159548No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG7360.14433070557320468No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG6530.12805428089579166No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG6410.12570106287014157No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6320.12393614935090402No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6150.12060242381456641No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6110.11981801780601639No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5490.107659724673491No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5380.10550260814997843No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5360.10511040514570341No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG5330.1045221006392909No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG5120.10040396909440326No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)