FastQCFastQC Report
Wed 8 May 2024
EGAF00007930283

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930283
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509940
Total Bases15.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG75471.4799780366317608No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT46700.9157940149821547No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG17730.3476879632897988No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG17610.3453347452641487No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC17570.3445503392555987No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16940.33219594462093577No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG16320.3200376514884104No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG13720.26905126093265874No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13500.2647370278856336No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC11680.22904655449660746No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11180.21924147938973212No Hit
ATCGGCTCCCTGGCTGGTGCAATTGGCGGTA10790.21159352080636937No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG10110.19825861866101893No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT9800.19217947209475625No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9670.18963015256696866No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC9510.18649252853276857No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9160.17962897595795582No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8790.1723732203788681No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA8400.16472526179550534No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG8360.16394085578695533No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8290.1625681452719928No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT7600.14903714162450485No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7490.1468800251009923No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG7270.14256579205396713No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6790.13315291995136683No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6720.13178020943640428No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6520.12785817939365415No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5600.10981684119700356No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5580.10942463819272855No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5340.1047182021414284No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)