FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930286

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930286
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499515
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11890.23803088996326438No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10510.21040409196921012No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9720.1945887510885559No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7390.14794350520004404No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7040.14093670860734914No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6560.13132738756593895No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6050.12111748395944065No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5700.11411068736674575No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)