FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007930299

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930299
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438241
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61141.3951227749115214No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18570.42373944929844537No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15730.35893492393454746No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12960.2957276932099005No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11790.2690300542395622No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11340.25876173155866294No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9300.21221200207191931No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8360.19076261691626295No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6970.15904490907970728No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG6950.15858853918277843No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6210.14170285299641067No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6180.14101829815101735No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5920.1350854894909422No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5750.1312063453670469No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC5450.12436079691311402No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5330.12162257753154088No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA5070.1156897688714657No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4990.11386428928375028No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4950.11295154948989254No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4930.11249517959296369No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4630.10564963113903081No Hit

[OK]Adapter Content

Adapter graph