FastQCFastQC Report
Wed 31 May 2023
EGAF00007930301

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930301
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473252
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29120.6153169981320734No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20500.43317302409709835No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17590.37168358506672977No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14120.2983611268415136No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13670.2888524507027968No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11980.2531420892040604No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9640.2036969732827331No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9160.19355438540143516No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8150.17221269006787082No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG7660.1618587982723792No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6800.14368666165172045No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6780.14326405382333304No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6710.14178492642397708No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6390.13502320116977848No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC6080.12847277982977356No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5910.12488061328848055No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA5480.11579454497815118No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5090.10755369232459662No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4950.10459543752588472No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4950.10459543752588472No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4740.1001580553278169No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)