FastQCFastQC Report
Wed 31 May 2023
EGAF00007930302

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930302
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458741
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17250.37602917550426057No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC15000.32698189174283526No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12420.27074100636306764No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9800.2136281692719857No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8330.18158394388118787No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8000.17439034226284547No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7410.16152905452096064No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6640.14474398407816175No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6430.14016623759376207No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5830.12708696192404864No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5640.12294519129530607No Hit
ATAACGCAGGTAAGAGTACACTTCGCGTTCTTCTTCGGTATAAC5530.12054732408919193No Hit
GCCATCGCACTGCGGGTCACCCAGCAGGGCATCAATCAGGGTGC5510.12011134823353482No Hit
GTAGTTCGGGTCGATATCTGCGACACCTTCGGCGTCCAGCATTT5440.11858543273873492No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA5410.11793146895524927No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5170.11269975868736389No Hit
TACATCGTACGGGTAACAGTTGGAATAGGCTTTGCTACGTTCAA5110.11139183112039254No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4730.10310828986290739No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA4630.10092841058462183No Hit
ACCGCTAGAAGCAACCAGGCTACGCAGGGAGGCATAGTCCGGCA4630.10092841058462183No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)