FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007930303

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930303
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458741
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29020.632600966558472No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17810.38823649946265976No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG15380.33526543300032047No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13520.2947196784242089No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12910.2814224148266669No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11630.25351996006461164No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10800.23542696205484137No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9940.2166800002615855No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9620.20970438657107168No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7150.15586136839741815No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6820.14866776677907578No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6350.13842233417113362No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6160.134280563542391No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5540.12076531201702048No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5530.12054732408919193No Hit
ATCGTGAAAACCATCACCAACGACCAGATTG5510.12011134823353482No Hit
ACTCTGACCGGTAAAGTTGAGGATAACCACG5490.11967537237787772No Hit
CCGGATTTTGAACAGAACATTGCGACCACCA5450.11880342066656348No Hit
GGTCGTATTTGCGATTCTCCGCACCGCATCC5150.11226378283170678No Hit
AACTGCACCCTGATCGACGCACTGCTGGGCG5050.11008390355342121No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4720.10289030193507884No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)