FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930311

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930311
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420482
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61581.46450977687511No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35750.8502147535447415No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13650.3246274513534467No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13460.32010882748845376No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11510.27373347729510417No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG11230.26707445265195656No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8950.21285096627204017No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8540.2031002516160026No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8470.2014354954552157No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8250.1962034046641711No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA8220.19548993773811957No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7240.1721833514871029No Hit
ATGTCCAACATGGACATCGATGGTATTAACA6810.1619569922136976No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6800.16171916990501378No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG6490.1543466783358146No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC6470.15387103371844693No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6100.14507160829714472No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5290.12580800129375336No Hit
CCGGCTCTGGGCGCTCGTCGTAAGAAAAAAA5150.12247848897217954No Hit
ACCCAGGGCGAAGTAAACGTGACGGGTGTTA5140.1222406666634957No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5130.12200284435481186No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4850.11534381971166424No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4800.11415470816824502No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4770.1134412412421935No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4690.11153866277272273No Hit
ACCACTCCGACGAAAAGCCACTTCGCAAACC4380.10416617120352359No Hit
CCGACCAAGTCTCACTTCGCCAACCTGAAGG4330.10297705966010434No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4310.10250141504273666No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)