FastQCFastQC Report
Sun 21 May 2023
EGAF00007930312

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930312
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435922
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18050.4140649015190791No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA16770.38470185033102255No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA10150.2328398199677924No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9910.22733424787003179No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8560.19636540482012838No Hit
GCGGACGCGACGCTCTTTAGTAGCGGTACCTGCAAAGCCCAGGG8110.1860424571368272No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7690.17640770596574618No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7100.16287317455875133No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6610.15163263152582343No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGCTAG6060.13901569546845538No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6050.1387862966310487No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5970.13695110593179513No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5630.1291515454599676No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5550.12731635476071407No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5460.12525176522405385No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5220.11974619312629324No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4850.11125843614224562No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT4770.10942324544299209No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC4710.10804685241855194No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT4520.10368827450782478No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG4440.10185308380857125No Hit
CGGCTGGCCCAGAGTCGCACGGTGCAGGTTCCAGCTGCCGAAAA4370.10024729194672442No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)