FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930313

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930313
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435922
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60481.3874041686356733No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT40500.9290652914971028No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15660.3592385793788797No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10550.2420157734640601No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10470.24018058276480655No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10160.23306921880519907No Hit
CGTCGTCGTTCCGAACTGCGCGATTACGGCG8240.18902464202311423No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7300.1674611513068852No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6800.15599120943655057No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6650.1525502268754502No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC6260.1436036722165892No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6220.14268607686696244No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6090.13970389198067543No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5940.13626290941957506No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5930.13603351058216837No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5700.13075733732181447No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5580.12800455127293414No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5490.12593996173627392No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5430.12456356871183376No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5110.11722280591481964No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4930.11309362684149918No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4840.11102903730483894No Hit
GCAGCTACCGCGACCGGTCTGCCGCTGCGTG4490.1030000779956047No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG4440.10185308380857125No Hit

[OK]Adapter Content

Adapter graph