FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930319

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930319
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485572
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35180.7245063553911676No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27630.5690196304564514No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT23240.47861079304407994No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14850.3058248828186139No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12100.24919064525961132No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8650.1781404199583172No Hit
CCGCCGGGTCTGAAGGGTGCAAAAGGTGAAC8220.16928488463090954No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8020.1651660309902548No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7960.16393037489805837No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7950.16372443221602562No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7810.16084123466756733No Hit
GAAGTCTCCATTGCCGAACCGACCACTTACA7170.14766090301747217No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6850.1410707371924246No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6650.13695188355176988No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG6490.13365680063924607No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6430.13242114454704967No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6060.12480126531183842No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5980.12315372385557652No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5370.11059122025157957No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5340.10997339220548137No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5270.10853179343125223No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5080.10461888247263022No Hit
ACCCAGGGCGAAGTAAACGTGACGGGTGTTA5040.10379511174449928No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4900.10091191419604095No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)