FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930321

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930321
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489637
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38580.7879306506656972No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29750.6075929719363529No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT23590.48178548598247267No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA15110.30859595986414423No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11510.23507210443655197No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9240.18871122893082018No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8200.16747100402951576No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8050.16440751005336607No Hit
CCGCCGGGTCTGAAGGGTGCAAAAGGTGAAC7940.16216094780418963No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7420.1515408353535374No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7400.1511323694900508No Hit
GAAGTCTCCATTGCCGAACCGACCACTTACA7290.14888580724087436No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6840.13969532531242534No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6390.1305048433839763No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG6380.13030061045223298No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6210.12682865061259668No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6120.12499055422690687No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5700.11641277109368778No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5640.1151873735032279No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5310.10844768675569862No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5250.10722228916523874No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5150.10517995984780562No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5150.10517995984780562No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5070.10354609639385913No Hit
ACCCAGGGCGAAGTAAACGTGACGGGTGTTA5020.10252493173514257No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4980.10170800000816932No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)