FastQCFastQC Report
Sun 21 May 2023
EGAF00007930328

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930328
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences436420
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8760.20072407314055268No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6630.1519178772741854No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6620.15168874020439027No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6000.13748224187709088No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5970.13679483066770542No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5300.12144264699143027No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5130.11754731680491269No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT4810.11021493057146786No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)