FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007930331

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930331
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454449
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT46561.0245374068377309No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC31350.6898463854029825No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA18900.41588825148696557No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG18870.4152281114052402No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18650.41038708413925434No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13420.2953026632251364No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12240.2693371533439396No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8110.1784578687597508No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7570.16657534728869466No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6910.15205226549073714No Hit
GGTCGTGGCATCACCGGTGTTATGATCCCAG6730.14809142500038508No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6550.14413058451003302No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6270.1379692770805965No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6070.13356834320242755No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5870.1291674093242586No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5670.12476647544608967No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5590.12300610189482208No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5320.11706484115929401No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5260.11574456099584332No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5110.1124438605872166No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4800.10562241307605474No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4730.1040820862186956No Hit

[OK]Adapter Content

Adapter graph