FastQCFastQC Report
Wed 31 May 2023
EGAF00007930337

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930337
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences426410
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21220.497643113435426No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14390.3374686334748247No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9250.21692737037123894No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7040.1650993175582186No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6000.14070964564620903No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5740.13461222766820666No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5410.12687319715766515No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5400.12663868108158816No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4960.11631997373419947No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4610.10811191107150395No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)