FastQCFastQC Report
Wed 31 May 2023
EGAF00007930340

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930340
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences368729
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7280.1974349725679293No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6140.16651795763284147No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5610.1521442577068796No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG4560.12366805974035132No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC4020.10902315792899392No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG4000.10848075415820291No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT3700.10034469759633768No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)