FastQCFastQC Report
Wed 31 May 2023
EGAF00007930341

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930341
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences368729
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG17400.47189128058818264No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14300.3878186961155754No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6030.16353473689349088No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5440.14753382565515596No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5070.13749935589552217No Hit
ATGTCCAACATGGACATCGATGGTATTAACA4570.12393926162574682No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4190.11363358998071754No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC4010.10875195604359841No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA3800.10305671645029275No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)