FastQCFastQC Report
Sun 21 May 2023
EGAF00007930345

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930345
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences396722
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20870.5260610704725224No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19310.48673882466815555No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7430.18728479892720848No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6770.17064846416382254No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5550.13989645141938184No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5500.13863612302821623No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5360.13510720353295252No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC5000.1260328391165602No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4310.10864030731847489No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4040.10183453400618066No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)