FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007930347

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930347
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences405167
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21880.5400242369195912No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG16970.4188396389636866No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8190.20213887113215045No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6880.16980652422334494No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5910.14586577880232102No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5860.1446317197600002No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5460.13475924742143364No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4860.11995053891358377No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC4820.11896329167972713No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)