FastQCFastQC Report
Wed 8 May 2024
EGAF00007930363

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930363
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498474
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24550.4925031195207774No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA16720.3354237131726028No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15690.31476064950228094No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14010.2810577883701056No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT12240.24554941682013504No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10440.20943920846423283No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC9250.1855663484956086No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC7550.1514622628261454No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7550.1514622628261454No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6740.1352126690659894No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6650.1334071586481943No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6600.1324040973049748No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6230.12498144336515044No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5730.11495082993295538No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5580.11194164590329686No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5330.10692633918719933No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5310.10652511464991153No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4990.1001055220533067No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)