FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930365

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930365
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499583
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23360.4675899700350092No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA17240.34508780322789206No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15970.319666601946023No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13760.27542970837678626No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT13030.26081752181319223No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC10330.20677244822181698No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10150.2031694433157253No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC7740.15492921096194226No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7420.14852386890666816No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7240.14492086400057647No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7110.14231869379062137No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6820.13651385255302922No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6260.12530450395629955No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6010.12030033047561667No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5740.11489582311647914No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5590.11189331902806941No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5530.11069231739270552No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5090.10188497206670363No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)