FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930367

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930367
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483001
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22970.475568373564444No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10410.21552750408384247No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG8780.1817801619458345No Hit
ATGTCCAACATGGACATCGATGGTATTAACA7440.15403694816366842No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG7250.15010320889604784No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG5720.11842625584626118No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC5530.11449251657864062No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)