FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930380

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930380
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435943
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13160.3018743276070495No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11550.2649428939104424No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8540.19589717004287258No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8110.1860334952046483No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7160.16424165544578076No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7150.16401226765884533No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6310.14474369355626768No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6070.13923838666981692No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5990.13740328437433336No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5110.11721715912401391No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4630.10620654535111242No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)