FastQCFastQC Report
Sun 21 May 2023
EGAF00007930381

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930381
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435943
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46541.0675707603975748No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14110.3236661673659171No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13840.31747269711866No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9210.2112661517675476No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7960.1825926784006166No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7730.1773167593011013No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7210.165388594380458No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6450.14795512257336393No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6360.14589063249094492No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6310.14474369355626768No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6220.14267920347384866No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5500.1261632828144964No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4800.11010613772901502No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA4750.1089591987943378No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4500.10322450412095158No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)