FastQCFastQC Report
Wed 31 May 2023
EGAF00007930383

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930383
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441913
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48301.0929753141455445No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17530.3966844152582069No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14920.33762301629506264No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11930.2699626397051003No Hit
GACATGGCAGCTCCGCCAACCCTGCCGCAGC9150.20705432969837953No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8390.18985637444474365No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8230.18623575228608344No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7720.1746950191553541No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6970.15772335278663446No Hit
TTCCTGCACGATGCGAAAGATCGTCTGCAGG6890.15591304170730438No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6280.1421094197274124No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5770.13056868659668305No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5520.1249114644737765No Hit
ATGCTGCTGAAAATGAAGGCGCACATTGACC5280.11948053123578622No Hit
GCGGCTCCACCGACCCTGCCGCAGCCACCGT4960.11223928691846585No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4790.10839237587488941No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4540.10273515375198285No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA4500.1018299982123178No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)