FastQCFastQC Report
Wed 31 May 2023
EGAF00007930384

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930384
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465761
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12060.25893108267974346No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11940.2563546539963629No Hit
GCCCGGCAGAACATCGGAGGCGTTACGGTAGTGCTGACCTACGC9130.19602328232720215No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8320.17863238871438356No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8320.17863238871438356No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8310.17841768632410185No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8060.17305012656705906No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7060.15157988753888796No Hit
GGAAGCGTCGTTAACTGGGTTGGTCACGTCGACGTTTGCAGACG7050.15136518514860625No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5930.12731851743705463No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5850.12560089831480095No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5740.12323917202170212No Hit
GGCAGCCGGACCAAATTCCGGGTTGAAAACACCGTGCGCTACAG5430.11658339792296908No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5000.1073511951408555No Hit
CAGGTTGTAGCAGCCCCAACCACCTTGCAGCCAGTGACCCGGCA5000.1073511951408555No Hit
GCGGGTGTTGTTGCGAGCACGACCACGACGACCGCCCGGCGGCG4750.10198363538381273No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)