FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930385

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930385
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465761
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22120.4749216873031447No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18920.40621692241299723No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15750.3381562646936948No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12530.2690220950229839No Hit
GACATGGCAGCTCCGCCAACCCTGCCGCAGC9840.21126715203720361No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9580.20568488988987912No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8780.18850869866734227No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8040.17262072178649565No Hit
TTCCTGCACGATGCGAAAGATCGTCTGCAGG7330.15737685207649418No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7120.15286810188057823No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6520.13998595846367556No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6220.13354488675522425No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6130.13161256524268886No Hit
GCGGCTCCACCGACCCTGCCGCAGCCACCGT5560.11937452899663133No Hit
ATGCTGCTGAAAATGAAGGCGCACATTGACC5400.11593929075212393No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5200.11164524294648973No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4790.10284244494493956No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)