FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930389

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930389
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences421132
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46641.1074912379016555No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9270.22012100719014466No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7880.18711472887360733No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7680.18236562407986096No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7620.18094089264173704No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6180.1467473381267631No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5040.11967744080240875No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4860.115403246488037No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4800.11397851504991309No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)