FastQCFastQC Report
Wed 31 May 2023
EGAF00007930390

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930390
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420590
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16350.3887396276658979No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14020.3333412587080054No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG12150.2888799067975939No Hit
GTCAGAGCTTTTGGTGGTGTTGATAGAGTTCAGAACCGCCTGCG11020.2620128866592168No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10780.2563066168953137No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8390.1994816804964455No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7300.17356570531871895No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6970.1657195843933522No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6700.15930003090896122No Hit
GTCGTGACGTTTCAGCGGGAATGGGCCACCCAGATCGTCGATGG6610.15716017974749755No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6350.15097838750326922No Hit
CAGACCTTTGCCTTCATCCATGTCTTCGGTGGCCGGGGTGGTGT6100.1450343564992035No Hit
TTTGTCGATGGTCTGCTCCAGGTTACCAAAGAAGCCTGCTTTTG5870.13956584797546304No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG5870.13956584797546304No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4770.11341211155757387No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4490.10675479683302028No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4400.10461494567155663No Hit
TTCGCTCTGCAGCGCGTCGGTCTGGTCGGCCAGTGCTTCCAGTG4350.10342613947074347No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4330.10295061699041821No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)