FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930391

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930391
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420590
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44381.055184383841746No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36690.8723459901566847No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14100.33524334862930644No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG12070.28697781687629287No Hit
GTCGCTGGCCTGATCGTGGGCGCAGCGACTA11470.2727121424665351No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9090.21612496730782949No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8480.2016215316579091No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGA7730.18378943864571198No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7070.16809719679497848No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7050.16762167431465322No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6610.15716017974749755No Hit
GACGATGGCGAAACCACTACCGTAACCGTTA6310.1500273425426187No Hit
GAACCGATCTACGCTACCATCGACGACCTGG6280.14931405882213084No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG5730.13623719061318623No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5060.12030718752229011No Hit
GCTGCTTCTAGCGATGCACTGGAAGCCCTGG4740.112698827837086No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4670.11103449915594758No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4530.10770584179367079No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG4520.10746808055350818No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)