FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007930392

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930392
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences395756
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG12710.3211574808720525No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG10740.27137933474160847No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG9340.236004002466166No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG9030.22817089317660375No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7960.20113403208037278No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7900.19961794641142522No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG7090.17915078988063352No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6970.17611861854273844No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG6890.17409717098414174No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6790.17157036153589586No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6550.1655060188601057No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6460.16323189035668442No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5930.1498398002809812No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG5570.14074328626729601No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5480.13846915776387472No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5450.13771111492940094No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG5020.12684583430194363No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG4830.12204489635027643No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG4390.11092693477799452No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG4370.11042157288834534No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4260.10764208249527488No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG4230.1068840396608011No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG4210.10637867777115192No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4060.10258846359878308No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4030.10183042076430933No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)