FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930393

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930393
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences395756
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43631.1024469622696813No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13240.3345495709477557No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11200.28300265820353954No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9670.24434247364537748No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9170.23170842640414802No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8510.21503148404572514No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8360.21124126987335629No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8310.20997786514923336No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8130.20542960814239078No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8020.2026501177493203No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7160.18091955649440564No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6960.17586593759791389No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6890.17409717098414174No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6800.17182304248072044No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6730.17005427586694832No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6440.16272652846703525No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6120.1546407382326484No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6030.15236660972922708No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5870.1483237146120337No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5400.13644771020527802No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5140.12987800563983867No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG5130.1296253246950141No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG4880.12330830107439938No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG4680.1182546821779076No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG4650.11749663934343385No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4550.11496982989518795No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4490.11345374422624041No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG4400.11117961572281912No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4360.11016889194352077No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG4180.10562063493667814No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4040.1020831017091339No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG3980.10056701604018639No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)