FastQCFastQC Report
Wed 8 May 2024
EGAF00007930400

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930400
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462401
Total Bases20.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT26180.5661752461607998No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT22690.4906996308398987No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC18220.39403028972688203No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC15310.331097899874784No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCTGCT13080.2828713605723171No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG11390.246322996706322No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11160.24134895902041734No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10530.22772442101120025No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9340.20198918254934567No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9010.19485251978261292No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8690.18793211952396296No Hit
CGGGATTTCTTCGTAGTCGTTTTCATACCAATCCGGGTTGTGCA7470.16154809353785998No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7020.1518162806741335No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6190.13386649250326016No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5940.12845992980118986No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5760.12456720465569929No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5530.1195931669697946No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4990.1079149915333228No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT4780.10337347886358378No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)