FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930401

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930401
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462401
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA45630.9868058243818676No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG26390.5707167588305389No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA23830.5153535567613392No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA19950.43144370362520845No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15720.33996466270617925No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG13770.2977934736300311No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12500.27032813510351406No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12270.2653540974176094No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11310.2445928966416595No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9390.20307049508975974No Hit
CAGCCGCAGCGCCGTAAACGTCGTGCGGCTC8140.17603768157940836No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6590.1425169928265726No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6180.13365022999517737No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6140.1327851799628461No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6120.13235265494668047No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5450.11786306690513212No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5250.1135378167434759No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)