FastQCFastQC Report
Wed 31 May 2023
EGAF00007930402

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930402
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438628
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT24660.5622076110052254No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT21740.49563639348149224No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC17760.40489891206215745No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC14930.34037954713333396No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCTGCT12390.2824717072325524No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10730.24462642603755347No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG10500.23938280273945123No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9180.20928896468077732No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8470.19310212754315728No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8150.18580665165014545No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8070.1839827826768925No Hit
CGGGATTTCTTCGTAGTCGTTTTCATACCAATCCGGGTTGTGCA6950.15844861705135105No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6910.15753668256472456No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6250.14248976353538761No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5750.13109058245255661No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5330.12151527034297854No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5300.1208313194780087No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5100.11627164704487629No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)