FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930403

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930403
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438628
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA43600.9940085904228639No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35360.8061500861778089No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG24390.5560520532204966No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA21330.48628906499357083No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA18820.4290651759577592No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16540.37708491022004975No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG12600.2872593632873414No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11600.2644610011216794No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10410.2373309501445416No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8170.1862626188934587No Hit
CAGCCGCAGCGCCGTAAACGTCGTGCGGCTC7260.16551610932270627No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6670.15206507564496569No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5700.1299506643442735No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5540.12630292639776758No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5520.12584695915445435No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5330.12151527034297854No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5040.11490374531493658No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)