FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930405

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930405
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478253
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT69211.4471419938818995No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39920.8347046437764112No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG26370.5513818000096183No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16200.3387328464222911No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG15060.3148960905629447No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC11340.2371129924956038No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11180.23376748290130955No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10320.21578536883197805No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC9530.19926691521015027No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9070.18964857512655436No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA8860.1852575937840432No Hit
CAGCCGCAGCGCCGTAAACGTCGTGCGGCTC8120.16978461191043234No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC8050.1683209514629286No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7740.16183902662398356No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7150.14950245999502354No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7100.14845698824680661No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6780.14176596905821814No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6410.13402947812141272No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6180.12922030807961477No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5800.12127472279316595No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5670.1185564962478019No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5240.10956543921313613No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5080.10621992961884191No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4900.10245623132526088No Hit

[OK]Adapter Content

Adapter graph