FastQCFastQC Report
Wed 31 May 2023
EGAF00007930413

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930413
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543920
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15000.27577584938961613No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13070.24029269010148552No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7420.1364171201647301No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC6630.12189292543021034No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5860.10773643182821002No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5740.1055302250330931No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5700.10479482276805413No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)