FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930427

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930427
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences519913
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14760.2838936514378367No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14560.28004685399287954No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13540.26042818702359816No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11780.22657636950797538No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11090.21330491832287327No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8960.17233652553407974No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7600.14617830290837122No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7290.14021576686868764No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7160.13771534852946551No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7120.1369459890404741No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7090.13636896942373053No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6550.12598261632234625No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6540.12579027645009838No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5410.10405587088609056No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5210.10020907344113342No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)