FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930430

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930430
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478103
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9460.19786531354122439No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7520.15728828306871115No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7340.15352340395270475No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7220.15101348454203384No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA7070.14787608527869517No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6350.13281656881466963No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5360.11210973367663454No Hit
CAGCAGAACAACGGAGACGTCGTAATCGTTGGCCGCTTTGTCAG5080.10625325505173572No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4800.1003967764268369No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)