FastQCFastQC Report
Wed 31 May 2023
EGAF00007930436

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930436
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505283
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT20190.3995780582366713No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC18990.37582899088233723No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16380.3241747693866605No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC14810.29310307293140675No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG10790.2135436972943875No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT9630.1905862655185312No Hit
CGGTTCGCGCGGCTCACGTGGTACGCGCGGTTCACGCGGAACAC9240.18286781862837262No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8700.17218073831892228No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7990.15812920680094125No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7550.1494212154376854No Hit
GATACGCGGTACACGAGGTTCGCGCGGGGAACGTGGCACACGCG7100.14051531517981014No Hit
AGTGCTGACCACCTTGGTAGAGTGGTTATCTTCAACTTTGGACG7090.14031740628519068No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC6920.13695295507666No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC6730.13319268607889043No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6610.13081777934345704No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6140.12151606129634283No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5890.11656833893085657No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5650.11181852545998974No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5450.10786034756760073No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5240.10370426078059225No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5110.1011314451505394No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)