FastQCFastQC Report
Wed 31 May 2023
EGAF00007930437

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930437
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505283
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43310.8571434225968417No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA42580.8426960732896218No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA21200.4195668565932359No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA19230.38057880435320407No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16550.3275392205951912No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12610.24956311611512758No Hit
CCTACCGATGGCCCGCCGCACCGTGGTGGCG9380.18563854315304493No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA9270.18346154531223097No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8340.16505601811262202No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG7860.1555563911708884No Hit
CTGCGTGTCTGCGCTGCGCTGTCCATCCCGA7670.15179612217311883No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7520.14882748875382706No Hit
GAAAAAGCTATCCCTACCCTGGCAGACGCAG7470.14783794428072983No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG7400.14645258201839365No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7270.1438797663883408No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7060.13972367960133233No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC6670.13200523271117373No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6190.12250560576944008No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG6030.11933906345552889No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5790.11458924998466206No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5690.11261016103846755No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5060.10014190067744215No Hit

[OK]Adapter Content

Adapter graph