FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930441

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930441
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences512222
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44570.8701305293407936No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT18050.35238627001573536No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17710.34574852310131154No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT16360.3193927632940405No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12620.2463775472353784No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC11390.22236452163319811No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA11240.21943610387683468No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10980.21436017976580465No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9580.18702828070641245No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC9250.18058576164241286No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7090.13841654595077915No Hit
AACGACCTGTACCGCCGCGTGATCAATCGTA7030.13724517884823378No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT6920.13509767249356724No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6710.13099788763465842No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA5570.10874191268629618No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5410.1056182670795085No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)