FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007930443

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930443
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences519754
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44860.863100620678244No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT18500.35593761664171897No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17910.34458609265152357No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT17220.331310581544346No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13030.25069552134278905No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA11580.22279770814654623No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11500.22125851845296043No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC10850.20875260219257574No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9940.1912443194280371No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC9160.17623721991557545No Hit
AACGACCTGTACCGCCGCGTGATCAATCGTA7320.14083585696310177No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6990.1344866994770603No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6570.1264059535857348No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT6540.1258287574506401No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA5780.1112064553615749No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5490.10562689272232634No Hit
ATGGAACCGGTCCAGCAGCGTCCGGTTATGT5470.10524209529892986No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)