FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930445

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930445
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501549
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13560.2703624172314171No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13390.2669729179003448No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11280.22490324973232925No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10820.21573166330707466No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10330.20596192994104265No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA9690.19320146187112325No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8130.16209782095069475No Hit
CTGAACCTGCCGGAAGAAGTAGTGCAGTACA7070.14096329570989075No Hit
TTCGAACAGCCGACCCTGACCTTCGGCGCGG6620.1319910915982287No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6290.1254114752496765No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6020.12002815278267925No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5930.11823371196034685No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5280.10527386157683497No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5050.10068806836420768No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)