FastQCFastQC Report
Sun 21 May 2023
EGAF00007930446

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930446
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510225
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15900.31162722328384534No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12280.24067813219657994No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11970.23460238130236663No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9500.18619236611298937No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG9160.17952863932578764No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8740.1712969768239502No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8720.1709049928952913No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7460.14621000538977902No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7240.14189818217453085No Hit
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAATGGC7230.1417021902102014No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6310.12367092949189085No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG6310.12367092949189085No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6220.12190700181292566No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5600.10975550002449899No Hit
CACGTCCTTCATGAAGTTGTCGTTATAGTTCATTGCTTCTTCGG5340.10465970895193297No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC5170.10132784555833212No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)