FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930447

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930447
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510225
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA26710.5234945367239943No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16480.3229947572149542No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14320.2806604929197903No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12960.2540055857709834No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11450.22441079915723455No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9430.18482042236268312No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9230.18090058307609388No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG8870.17384487236023322No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7600.14895389289039151No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7550.14797393306874418No Hit
CGTTCTCGCCACGAGAACACCTCTCAGGTTC7160.14033024645989514No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6640.1301386643147631No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA6500.12739477681415062No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6170.12092704199127835No Hit
GATTCCAAAGCCAATGCGTTCAACGCAGCTA5720.11210740359645255No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5400.10583566073790975No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG5150.10093586162967319No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)