FastQCFastQC Report
Wed 31 May 2023
EGAF00007930448

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930448
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495198
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15780.31866041462203No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12260.24757773658213483No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11960.24151955379464377No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG10040.20274718395470095No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG9210.18598621157597567No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8730.17629311911598997No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8520.17205239116474622No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7060.1425692349322897No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7050.14236729550604002No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG6590.13307808189855372No Hit
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAATGGC6550.1322703241935549No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6360.12843347509481057No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6020.12156753460232068No Hit
CACGTCCTTCATGAAGTTGTCGTTATAGTTCATTGCTTCTTCGG5830.11773068550357635No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5810.11732680665107695No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC5070.10238328910859898No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)